Without baseline performance, youre in the dark when trying to optimize database and application performance. In this case, selection bias may occur if these traits are analyzed individually. Resende 2016 suggests the use of the selegen reml blup software for the application of analysis of mixed models in the estimation of variance components and estimation of genetic parameters to optimize the conduction of plant breeding programs. The use of blue in both generations led to lower values of incidence. Properties see more details among provenances as well as among and within families in all traits confirmed their high value. Build software which people dont consider applications software like word processors, spread sheets, games, and smart phone tablet aps.
How to calculate the blupbest linear unbiased prediction. Andrei nunes adjunct professor universidade federal do. Genes softwareextended and integrated with the r, matlab. This software contributes to maximum efficiency of genetic improvement programmes of various categories of plants, such as. Four mixed models were fitted to estimate the genetic parameters of wood airdrying, log circumference, hs ratio and bwd.
Selection of progenies of snap beans using mixed models reml blup genetics and molecular research 17 2. Brasileira pesquisa florestal pbf pesquisa florestal. Agricultural industry investigacion agricola natural selection analysis aspectos geneticos investigacion cientifica. The application is considered of selegenreml blup software for genetic selection during plant breeding. The significant genetic variation genetic variation subject category. Beyond the classical methods, also modern techniques for riskchance analysis, controlling or assessment are applied. The genetic values were also obtained from the selegen reml blup software resende, 2016, based on the multipleenvironment model that considered the data from all three sites. The application is considered of selegen remlblup software for genetic selection during plant breeding. Analyses were performed considering the linear mixed models reml blup procedure, implemented in the selegen reml blup software resende, 2016. The term reverse engineering as applied to software means different things to different people, prompting chikofsky and cross to write a paper researching the various uses and defining a taxonomy.
The genetic parameters were estimated using the selegen software resende, 2016, and the selection index were calculated using microsoft excel 2016. Genotype by environment interaction and teak tectona. Assessing the parental genetic differences and their subsequent prediction of progeny performance is an important first step to assure the efficiency of any breeding program. Software engineering and management kandidatprogram. Survival and growth data were analyzed using linear mixed models and remlblup. This was due to the development of specific softwares that allow the proper. Data re engineering is different from software re engineering.
The reml blup restricted maximum likelihood best linear unbiased prediction method. Variance components were estimated by using selegen reml blup software. Portanto, o algoritmo do tipo sbem sparse bifactorisation expectationmaximisation e o software do tipo sbemreml. When a kinship matrix reflects allelic correlations across genomewide snps and individuals are unrelated, then the proportion of phenotypic variance it explains is an estimate of the snp heritability of the phenotype the total variance explained by all snps. At present, singletrait best linear unbiased prediction blup is the standard. Estimation of genetic parameters and selection of elephantgrass. The present work aims to demonstrate the application of blupbased selection in pelargonium zonale and dianthus caryophyllus l. You will practice working in teams to gain experience in various roles important to your future career and to gain an understanding of the strength of a cohesive team. The bachelors programme in software engineering and management will develop your social, technical, and management skills, all important for a successful career in any domain.
In t1 stage, twenty and two 22 families were selected for t2 stage, and seven families were selected for t3 stage, being results of the crosses rb835486 x rb72454, sp701143 x rb855156, rb835054 x sp832847, sp803280 x rb835054, rb855156 x sp801816,sp803280 x rb855589, and sp803280 x rb835486. Selegen reml blup selegen software was developed to support the genetic improvement of forest species. The selegen reml blup software resende, 2002 was developed as a base for breeding perennial plants and it allows working with several reproductive systems and selection methods. Selection index based on phenotypic and genotypic values. Genotype stability and adaptability were analyzed using the harmonic mean of genotypic values. The software selegenreml blup uses mixed models, and was developed to optimize the routine of plant breeding programs. The use of mixedmodels of remlblup type has been successfully applied in the improvement of different crops, such as glycine max, solanum tuberosum, sorghum bicolor, coffea arabica, coffea canephora, brachiaria humidicola, panicum maximum, saccharum officinarum, passiflora spp. How to calculate the blup best linear unbiased prediction in statistics, best linear unbiased prediction blup is used in linear mixed models for the estimation of random effects. Remlblup procedure was applied at three and six years of age of trees for estimation. The software selegen reml blup was developed to meet the demands of plant breeding programs, and includes the following categories of plants. The model used was model 1, which is suitable for halfsibling progeny tests under randomized block design, with several plants per plot, only one site and a single population.
Oct 15, 2012 software re engineering is a costeffective option for software system evolution. Use and interpretation of software selegen reml blup and selegen genomics. Estimation of genetic parameters in coffea canephora var. The structure, contents, basic concepts, and destination. Parent trees that did not differ significantly from the resistant control clone. A selection intensity of 30% was carried out to indicate the best progenies, and 25% for the selection. Use and interpretation of software selegen reml blup. Frequent randomeffectsmodel questions cross validated. The backbone to any erp system is the engineering module. Combined selection in backcross population of papaya. Sep 28, 2016 the genetic parameters related to narrow heritability on a progeny basis and the genotypic values were analyzed using the restricted maximum likelihoodbest linear unbiased prediction reml blup, 14, 15 with the following univariate model of specific combined ability. The data were analyzed using the selegen reml blup software. Ana selena fernandez lucius nursery solutions supervisor.
The circulating diallelbased crossing of ten elephant grass genotypes was performed. Reml blup in analysis of precommercial simple maize. Other procedures included prediction of breeding values and deviance analyses. Development of superior lines of papaya from the formosa group using the.
Add your email address to receive free newsletters from scirp. It considers several experimental designs, mating designs, genotype x environment interaction, experiments repeated over sites, repeated measures. The progenies, parents and control trees were all planted in a completely randomized design. Pdf genetic evaluation of grain sorghum hybrids in. Blup breeding value estimation using blup technology on b l u. Bessie is a software designed for best linear unbiased prediction blup and bayesian markov chain monte carlo analysis of linear mixed models allowing for continuous andor categorical multivariate, repeated and missing observations, various random and fixed factors and largescale genomic marker data. Statistical analysis of each one of the combinations of the evaluated sites was performed using the following statistical model. With 247 monitoring, you can see and report on performance impacts after changes are made, allowing you to correctly optimize the database. An experimental design using the randomized block methodology, with three repetitions, was set to assess both the hybrids and the parents. This study aimed to apply the combined selection by using distinct selection indexes based on both the genetic values obtained by the reml blup methodology and the real measured values to.
Ten genotypes, seven cropping environments, and two growing seasons were studied in 2015. Biometric characteristics among fig tree genotypes in brazil. Stability and adaptability of curled greenleaf lettuce. Genetic parameters were estimated by the individual analysis of the 18 traits, using the following statistical model. Although planted in suitable climatic zones, some trials had low survival and or productivity. The software selegenremlblup uses mixed models, and was developed to optimize the routine of plant breeding programs. Genetic selection of elite plants of oil palm using selegen reml blup software oil palm cultivation is one of the peruvian amazon, which generates more interest among investors, which has allowed to install at least 70 thousand of ha. Pdf the software selegenremlblup uses mixed models, and was. Mabry iowa pork industry center iowa state university iowa pork industry center blup breeding value estimation blup best linear unbiased prediction prediction of an animals genetic merit bv unbiased means estimating bv after removing all nongenetic influences. The software selegen reml blup uses mixed models, and was developed to optimize the routine of plant breeding programs. Frontiers early selection enabled by the implementation. Genetic selection pinus greggii progeny to the establishment. The results showed a low genetic variability among the clones of robusta for all the evaluated traits.
Three examples of successful software reengineering. Basically, this method estimates components of variance and predicts genetic values. Selection of clones of umbucajazeira by procedures. Plant yield traits were evaluated, and data were subjected to the selegen reml blup software. Usually, genetic selection is carried out based on several traits, which can be genetically correlated. For this, 19 pineapple plants were visually selected and its slips were collected and planted in a single environment and nine traits were evaluated. The procedures required for the construction of selection indexes were performed by the selegen reml blup 27 and microsoft office excel 2007 software systems.
Software engineering whether your machines and process installations run smoothly and reliably depends for the most part on the control systems software. However, it can be used for other perennial or semiperennial plant species and animals, in which the selection of individuals prevails over the selection of groups of individuals. The fitting of population structure effects in a model of genetic evaluation is. Genetic selection of elite plants of oil palm using. The aim is to predict genetic values from individuals of families, estimate genetic parameters, guide the choice of individuals to obtain the maximum of immediate. Our engineers make an inventory of the desired functionalities and record these in a functional specification. The overall height, average crown diameter dmc and the diameter at breast height dbh were assessed as phenotypic traits. Frontiers phenotypic selection in ornamental breeding. Scielo scientific electronic library online fapesp cnpq bireme fapunifesp. By providing strong functionality to handle engineering change request ecr and change notices ecn, accelerated erp provides the management of engineering data. Each experimental unit consisted of a single plant.
The data were analyzed using the mixed model methodology reml blup of selegen software for estimation of genetic parameters in c. Blup maximizes selective accuracy, and allows the simultaneous use of several information sources, such as those from various experiments installed in one or several locations and evaluated in one or more crops. Reml blup on the basis of unbalanced data and employing the selegen reml blup geneticstatistical software developed by resende 2002. Maintenance of genetic diversity in eucalyptus urophylla s.
Selecting elephant grass families and progenies to produce. In this study, we estimate the genetic divergence in eucalyptus camaldulensis based on the morphological traits of 2 progenies grown in a savanna biome. Selection strategies for growth characters and rubber yield. The blups of individuals were obtained by the use of selegenreml blup software resende, 2016. Introduction to software engineeringreengineeringreverse. Random distribution of each pair from each family in each block was done using the software excel developed by the cooperative of forest genetic breeding, genfores murillo, 2011. Mixed models were performed using the free software selegen reml blup resende, 2016. A new classification is given that includes the basic disciplines of this program and its new disciplines that reflect important scientific, engineering, managerial, economic, production, and educational aspects of the software industry.
Recebido em 14092012 aprovado em 050320 publicado em 310320 doi. Data analysis of the progeny assays was done with selegen reml blup software resende, 2006 and the models used are described below. The variance estimate components and genetic parameters were obtained by the method of maximum likelihood restricted and best linear unbiased prediction reml blup, using the statisticgenetic software selegen reml blup resende, 2007b, resende, 2016. Software is leveraged at the edge of any business, forcing companies to systematise their intellectual property and knowledge and package it into software for sharing, sale or just internal use. The selection of superior genotypes based on the simultaneous response to several characteristics of agronomic importance is a key strategy to overcome the scarcity of available varieties of papaya. Survival ranged from 51% to 92%, and the mean annual increment varied from 19 to 46 m 3 ha. Hard and soft software engineering knowledge and competencies are applicable and in demand in almost every industry in todays technologydependent world. Classification of software engineering disciplines springerlink. African journal of biotechnology early selection in. Evaluation of the breeding potential for height growth in.
The software statistical analysis and sisvar, version 4. Reml is used for estimating the proportions of phenotypic variance explained by kinship matrices. Reml blup in analysis of precommercial simple maize hybrid author. Data re engineering is an expensive and time consuming process. Crop breeding and applied biotechnology, 16, 330339. A teak progeny trial was established with four replicates at different sites along the northern pacific region of costa rica. The software selegen reml blup and its applications. This strategy was deemed efficient, and 34 to 38 families were chosen from four evaluated characteristics underexplored by. The selegenremlblup software accomplished the statistical and genetic. Pdf selection index based on phenotypic and genotypic.
Selecting for stable and productive families of eucalyptus. Result and discussion at its release, the values of mf, wf, lf, and ss for rubi incaper 511 were 1. Combination of selection based on blue blup and blup blue in these. Estimates of variance components and genetic parameters were obtained by reml blup method maximum restricted likelihoodbest unbiased linear prediction. This method would predict a more accurate genotypic value, which is important for the selection of new cultivars, or even the genetic values additive effects for the selection of genitors piepho et al. Estimates of the variance components were obtained for each variable using the restricted maximum likelihoodbest linear unbiased prediction reml blup procedure.
Genetic divergence in eucalyptus camaldulensis progenies in. From their paper, they state, reverse engineering is the process of analyzing a subject system to create. Software re engineering consists of a combination of many subprocesses. Insart took charge by implementing modern technologies. The software engineering disciplines fixed in the international program curricula2004 are analyzed. The model used was model 1, which is suitable for halfsibling progeny tests under randomized block design, with several plants per plot, only one site and a. Selection of progenies of snap beans using mixed models. Thus, the present work aimed to evaluate the applicability and efficiency of multipletrait best linear unbiased prediction blup in the genetic selection of eucalyptus. Genetic variability in myracrodruon urundeuva allemao engl. Jan 29, 2016 three examples of successful software reengineering implementation.
Thompson 1971 have provided the basis for blup reml or simply, the blup method. Blup individual estimated shape via mixed models methodology for reml blup using the software selegen. The program is based on algorithms that maximize the. Comparing blue and blup reml for potato breeding 18425 genetics and molecular research 14 4. The software selegenreml blup statistical system and computerized genetic selection via linear mixed models was created in association with the improvement of the genetic selection methodologies from the mathematical and statistical analysis of field experiments data. The software selegenremlblup uses mixed models, and was developed to.
Pesquisador da embrapa florestas corporate author access the full text link to pdf. Genotypebyenvironment interaction in corymbia citriodora. The test is established in the santo antonio do leverger municipality, mato grosso state, brazil, with 2 progenies, five blocks and three plants per plot at 3 x 2 m spacing. Estimates of genetic parameters and genotypic values. Comparison of blue and blupreml in the selection of. The trials followed a randomized block design, with 28 open pollinated families and 36 seedlings per family per site.